Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015896794.1_cds_XP_016447957.1_42661
CDS Infomation

[gene=LOC107773019] [db_xref=GeneID:107773019] [protein=homeobox-leucine zipper protein HDG2-like] [protein_id=XP_016447957.1] [location=join(11033..11134,12097..12308,12512..12629,13305..13496,14243..14677,15393..15494,15609..15809,16021..16201,16277..16551,16666..16761,17308..17667)] [gbkey=CDS]
Sequence

ATGCCGTCAAGAATTTCTCGTCGGGCTAACAAGATGTCGTCGTTGGTCGTAAATGATGGA
ACTGATATTGGATTTTCTTCTTCTGGGCTTCCACTTGGACAGTCTAGTAGCATGATGGAC
AGTCAGCTTCATTCGCTGGACATGTTATCAAACACATCAGAAAGTGAAATGCCAAGACTG
AGTAGTGAAGATTTTGGAAGCAAATCTGGTAATGAAGGCAATTCTGGTGGTGATGAACAA
GATGTCAATAATAAGAGCCTCAAGCGAAAGCGTTATCACCGCCATACTCAGCATCAGATC
CAAGAATTGGAAGCATACTTTAAGGAATGTCCTCACCCAGATGACAAGCAAAGGAAAGAG
CTAAGTCGAGAATTAGGGTTAGAGCCTTTGCAAATCAAATTTTGGTTCCAAAATAAGCGT
ACTCAGATGAAGACTAAAAATGAGCGCAGTGAGAACTCACAGCTTCGAGCAGAAAATGAA
AAGCTTAGGGCAGAAAATCTGCGGTTCAGAGAAGCTCTGGGCAATGTCTCATGTCCTAAT
TGTGGTGGACAACAACCCCCTATTGGCGAAATGTCATATGATGAACATCATTTAAGGTTG
GAAAACACTCGACTCAGAGAAGAGATTGAGCGCATTTCCAATATAGCATCAAAATATGTG
GGGAAGCCATTTTCAAACCACAACAATGGTTACTCTCCTTCACTTGATCTCCGAGTTCCT
GCATTTTCACCCCCACAAAGTGTCAATGGAGACGCGTATGGAGATGGCGAAGATATTATA
ATAAGTTCAATAATTGGACCGACTGACGCTGAGAAGCCATTTATCATAGAACTTGCAGTT
GCAGCCATGGAAGAGTTTGTTCAAATGGCACATATGCAAGAACCACTTTGGTTCCCTAGC
ATTGAAAATGGAACAAGCTTGTTAAATGAAGAAGAGTATTTTAGGATTTTTCCAAGAGGA
ATTGGACCTAAGCCTGATGGATTTAAGACTGAAGCTTCAAGGGAAACTGCTGTTGTTATA
ATGAACCATGTTAACCTTGTGGAAATTCTCATGGATGTGAATCATTGGTCAAGTATGTTT
TCTGGTGTTGTCTCGAGAGCTTCAACTATTGATGTACTATCAACAGGAGTAGCAGGAAAT
TTTAATGGAGCATTGCAAGTGATATTAGCAGAAATTCAAGTACCCTCTCCTCAAGTTCCA
ACCCGAGAATGCTACTTTGCGAGGTATTGCAAGCACAGAGTTGATGGTACATGGGCTGTT
GTCGACGTTTCATTGGACCATTTACGCGCTATCCCATCTGCTAGGTGCAGGAGAAGGCCC
TCAGGTTGCCTGATTCAAGAGATGCCAAATGGGTACTCAAAGGTTACATGGGTTGAACAT
ATTGAAGTTGACGATAGTGCAGTCCACGATATTTACAAGCCATTAGTGAGTTCTGGCCTT
GCATTTGGGGCAAAGCGATGGATTGCAACTCTAGATAGGCAATGTGAACGTCTCGCAAGT
GCTATGGCCACAAATTTTCCAACCAATGACCTTAGTAACATGGTGTTGACAAATCAAGAT
AGCAGAAAGAGTATGTTGAAGTTAGCAGAGAGAATGGTGAATAGCTTTTGTTCTGGTGTG
AGTGCCACAGCTGGTAATCAATGGACGACGCTTTCTGGAAGTGGCACCGATGATAATGTT
CGAGTAATGACTAGGAAAAGTGTAGATGATCCTGGGAGACCACCTGGTATTGTCTTAAGT
GCTGCAACTTCATTTTGGCTGCCGATTTCTCCTAAAAGAGTGTTCGACTTCCTCCGCGAT
GAAAACACTAGGAGCGAGTGGGACATTCTCTCAAATGGGGGTATAGTTCAAGAAATGGCT
CATATTGCTAATGGCAGGGAAACAGGCAATTGTGTCTCGTTATTGAGAGTAAATAGTTCA
AACTCAAGCCAAAGCAATATGCTAATATTGCAAGAAAGCAGCACTGATCCAACAAACTCC
TATGTTATCTATGCACCTGTTGATATTGCTGCAATGAATATAGTATTAGGTGGTGGAGAT
CCAGATTTTGTTGCCCTTTTACCCTCCGGATTCGCGATACTACCCGATGGCCCTCCAGGA
AATAGTAGAGTTGGTTGTGGTGGATCTCTACTAACTGTTGCATTTCAGATTTTGGTTGAT
TCAATTCCTACTGCAAAGCTTTCACTAGGATCAGTTGCTACTGTGAACAATCTCATTGCT
TGCACTGTGGATAGGATCAAAGCTGCTCTTTTATCCGAGAGTACACCTTCTTAA

Peptide Sequence

PEP ID

XP_016447957.1
PEP Infomation

PREDICTED: homeobox-leucine zipper protein HDG2-like [Nicotiana tabacum]
Sequence

MPSRISRRANKMSSLVVNDGTDIGFSSSGLPLGQSSSMMDSQLHSLDMLSNTSESEMPRL
SSEDFGSKSGNEGNSGGDEQDVNNKSLKRKRYHRHTQHQIQELEAYFKECPHPDDKQRKE
LSRELGLEPLQIKFWFQNKRTQMKTKNERSENSQLRAENEKLRAENLRFREALGNVSCPN
CGGQQPPIGEMSYDEHHLRLENTRLREEIERISNIASKYVGKPFSNHNNGYSPSLDLRVP
AFSPPQSVNGDAYGDGEDIIISSIIGPTDAEKPFIIELAVAAMEEFVQMAHMQEPLWFPS
IENGTSLLNEEEYFRIFPRGIGPKPDGFKTEASRETAVVIMNHVNLVEILMDVNHWSSMF
SGVVSRASTIDVLSTGVAGNFNGALQVILAEIQVPSPQVPTRECYFARYCKHRVDGTWAV
VDVSLDHLRAIPSARCRRRPSGCLIQEMPNGYSKVTWVEHIEVDDSAVHDIYKPLVSSGL
AFGAKRWIATLDRQCERLASAMATNFPTNDLSNMVLTNQDSRKSMLKLAERMVNSFCSGV
SATAGNQWTTLSGSGTDDNVRVMTRKSVDDPGRPPGIVLSAATSFWLPISPKRVFDFLRD
ENTRSEWDILSNGGIVQEMAHIANGRETGNCVSLLRVNSSNSSQSNMLILQESSTDPTNS
YVIYAPVDIAAMNIVLGGGDPDFVALLPSGFAILPDGPPGNSRVGCGGSLLTVAFQILVD
SIPTAKLSLGSVATVNNLIACTVDRIKAALLSESTPS

Transcript Sequence

Gene sequence data has not been registered.